STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xthExodeoxyribonuclease III. (259 aa)    
Predicted Functional Partners:
EIO_2821
Exodeoxyribonuclease III, putative.
  
  
0.923
EIO_0100
Endonuclease III.
  
 0.833
hfq
RNA chaperone Hfq.
    
 
 0.805
EIO_2124
Ribosomal large subunit pseudouridine synthase B.
  
    0.767
EIO_0200
Iron-sulfur cluster assembly family protein.
     
 0.757
EIO_2598
Elongation factor G.
   
 0.735
EIO_1655
DNA-3-methyladenine glycosylase II, putative.
  
 0.706
EIO_1101
uracil-DNA glycosylase.
   
 0.657
truB
tRNA pseudouridine synthase B.
  
 
  0.648
EIO_2032
DNA polymerase III subunit beta.
   
 0.647
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.