Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIO_0207phenylalanyl-tRNA synthetase, alpha subunit. (357 aa)    
Predicted Functional Partners:
pheT
phenylalanyl-tRNA synthetase, beta subunit.
 
 0.999
csaA
Export-related chaperone CsaA.
  
 0.976
EIO_2848
Polyribonucleotide nucleotidyltransferase.
  
  
 0.852
EIO_2727
Methyltransferase.
 
    0.846
EIO_0206
50S ribosomal protein L20.
 
  
 0.822
EIO_2572
DNA-directed RNA polymerase alpha subunit.
  
  
 0.743
EIO_2598
Elongation factor G.
 
 
 0.741
EIO_2599
30S ribosomal protein S7.
   
  
 0.736
EIO_2092
tyrosyl-tRNA synthetase.
  
  
 0.687
glyQ
glycyl-tRNA synthetase subunit alpha.
   
  
 0.674
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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