STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pheTphenylalanyl-tRNA synthetase, beta subunit. (798 aa)    
Predicted Functional Partners:
EIO_0207
phenylalanyl-tRNA synthetase, alpha subunit.
 0.999
leuS
leucyl-tRNA synthetase.
  
  
 0.992
ileS
isoleucyl-tRNA synthetase.
  
 
 0.986
rpsC
30S ribosomal protein S3.
  
 
 0.967
rpsB
30S ribosomal protein S2.
 
 
 0.961
guaA
GMP synthase.
  
  
 0.958
rplO
Ribosomal protein L15.
  
  
 0.947
rpoB
DNA-directed RNA polymerase, beta subunit.
 
  
 0.935
EIO_2092
tyrosyl-tRNA synthetase.
  
  
 0.930
alaS
alanyl-tRNA synthetase.
 
 
 0.919
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.