Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_0210Glutathione S-transferase family protein. (231 aa)    
Predicted Functional Partners:
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
    
 
 0.825
rpoC
DNA-directed RNA polymerase, beta' subunit.
   
   0.746
rpoZ
DNA-directed RNA polymerase omega subunit.
  
 
 0.718
EIO_0084
Putative 16S rRNA processing protein.
 
      0.699
rpoB
DNA-directed RNA polymerase, beta subunit.
   
 
 0.658
EIO_2572
DNA-directed RNA polymerase alpha subunit.
   
 
 0.648
proS
prolyl-tRNA synthetase.
   
  0.645
leuS
leucyl-tRNA synthetase.
   
 0.644
metG
methionyl-tRNA synthetase.
   
 0.624
ileS
isoleucyl-tRNA synthetase.
   
 0.611
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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