Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
aspSaspartyl-tRNA synthetase. (593 aa)    
Predicted Functional Partners:
gatB
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
 
 
 0.994
pheT
phenylalanyl-tRNA synthetase, beta subunit.
 
  
 0.919
hisS
histidyl-tRNA synthetase.
  
  
 0.908
gatC
glutamyl-tRNA(Gln) amidotransferase subunit C.
  
 
 0.891
guaA
GMP synthase.
  
  
 0.879
alaS
alanyl-tRNA synthetase.
 
  
 0.873
valS
valyl-tRNA synthetase.
  
  
 0.871
EIO_2235
Conserved hypothetical protein.
  
 0.829
proS
prolyl-tRNA synthetase.
  
 
 0.752
EIO_2263
arginyl-tRNA synthetase.
  
 
 0.721
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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