Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0233Peptidase, M48 family, putative. (229 aa)    
Predicted Functional Partners:
EIO_0232
Conserved hypothetical protein.
       0.773
EIO_1478
Conserved hypothetical protein.
  
     0.682
EIO_0951
Conserved domain protein.
  
     0.656
EIO_2620
Conserved hypothetical protein.
 
 
   0.654
sdhD
Succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.648
EIO_0797
Membrane protein, putative.
  
     0.629
EIO_1154
Phage conserved hypothetical protein, phiE125 gp8 family.
  
     0.618
EIO_0881
2-dehydro-3-deoxygalactonokinase.
  
     0.607
EIO_1093
Periplasmic sensor signal transduction histidine kinase.
  
     0.591
EIO_1150
Conserved hypothetical protein.
  
     0.590
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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