Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0241Mg chelatase-related protein. (498 aa)    
Predicted Functional Partners:
dprA
DNA processing protein DprA, putative.
 
 0.894
comF
Competence protein F.
 
  
 0.862
EIO_0616
Peptide deformylase.
     0.740
EIO_0242
Conserved hypothetical protein.
       0.637
EIO_0243
Phosphopantothenoylcysteine synthase/decarboxylase.
       0.550
radC
DNA repair protein RadC.
  
  
 0.533
EIO_0244
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
     
 0.522
EIO_0245
Molybdopterin biosynthesis protein MoeB, putative.
       0.458
ruvC
Crossover junction endodeoxyribonuclease RuvC.
 
   
 0.453
EIO_0647
Riboflavin biosynthesis protein RibD.
       0.416
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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