Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0306Extracellular solute-binding protein. (263 aa)    
Predicted Functional Partners:
EIO_0303
Polar amino acid ABC transporter, inner membrane subunit.
 0.997
EIO_0304
Polar amino acid ABC transporter, inner membrane subunit.
 0.995
EIO_0305
ABC transporter related protein.
 
 0.993
EIO_0756
Binding-protein-dependent transport systems inner membrane component.
 
 0.884
EIO_2560
Glutamate/glutamine/aspartate/asparagine transport system permeaseprotein BztC.
 
 0.880
EIO_0755
His/Glu/Gln/Arg/opine family ABC transporter, permease protein.
 
 0.842
EIO_0758
ABC basic amino acid transporter, ATPase subunit.
 
 0.828
EIO_2561
ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztB.
 
 
 0.826
EIO_2559
ABC transporter related protein.
 
 0.814
EIO_0248
Polar amino acid ABC transporter, inner membrane subunit.
 
 0.773
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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