Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0324Putative lipoprotein. (167 aa)    
Predicted Functional Partners:
EIO_0323
Electron transport protein SCO1/SenC.
 
   
 0.945
EIO_0325
Conserved hypothetical protein.
 
     0.902
EIO_0327
Conserved hypothetical protein.
       0.781
EIO_0326
Di-heme Cytochrome-c peroxidase.
       0.774
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit.
  
 
 0.748
EIO_1335
SCO1/2 family protein.
 
   
 0.746
EIO_0328
Hypothetical protein.
       0.580
EIO_0772
Cytochrome c oxidase, subunit III.
  
   0.559
qoxB
QoxB, quinol oxidase subunit II.
  
 
 0.441
ctaC
Cytochrome c oxidase, subunit II.
  
   0.437
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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