Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0345Type I secretion target repeat protein. (424 aa)    
Predicted Functional Partners:
EIO_2696
core-2/I-branching enzyme family protein.
  
     0.769
EIO_2697
Conserved hypothetical protein.
  
    0.755
EIO_2698
Conserved hypothetical protein.
  
    0.754
EIO_0874
Conserved hypothetical protein.
 
   0.741
EIO_0810
Conserved hypothetical protein.
  
     0.734
EIO_2695
Nodulation protein H.
  
     0.722
EIO_2702
ABC transporter, permease protein.
  
     0.714
EIO_1649
Conserved hypothetical protein.
  
     0.701
EIO_2262
Sporulation and cell division repeat protein.
 
     0.701
EIO_0177
epsK domain protein.
  
     0.698
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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