Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIO_0348Putative transmembrane cytochrome D ubiquinol oxidase subunit I. (528 aa)    
Predicted Functional Partners:
EIO_0347
Cytochrome d oxidase subunit II.
 0.999
EIO_0346
Cyd operon protein YbgT.
 
 0.998
cydD
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD.
  
 0.990
EIO_0349
Cysteine ABC transporter permease/ATP-binding protein.
 
  
 0.975
EIO_0772
Cytochrome c oxidase, subunit III.
    
 0.844
EIO_0686
Cytochrome-c oxidase.
    
 0.827
EIO_2445
Cytochrome c oxidase, aa3-type, subunit I.
    
 0.827
EIO_2828
Ubiquinol--cytochrome c reductase, cytochrome B.
    
 0.815
fbcB
Cytochrome b.
    
 0.803
EIO_2635
Cytochrome c551.
  
 
 0.795
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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