Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0378Cell division protein FtsQ. (302 aa)    
Predicted Functional Partners:
EIO_0373
Cell division protein FtsW.
 
 0.998
EIO_0397
Stage V sporulation protein D.
 
 0.990
ddl
D-alanine--D-alanine ligase.
  
  
 0.985
EIO_0374
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.
 
  
 0.984
EIO_1170
Septum formation initiator.
 
 
 0.982
mreD
Rod shape-determining protein MreD.
  
 0.978
murC
UDP-N-acetylmuramate--alanine ligase.
  
  
 0.970
EIO_2262
Sporulation and cell division repeat protein.
 
 
 0.961
EIO_1728
UDP-N-acetylmuramoylalanine--D-glutamate ligase.
 
  
 0.941
EIO_0380
Cell division protein FtsZ.
  
 
 0.939
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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