Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0384DNA repair protein RecN. (551 aa)    
Predicted Functional Partners:
recA
Recombinase A.
  
  
 0.884
EIO_0383
Tetratricopeptide TPR_2 repeat protein.
 
     0.872
lexA
LexA repressor.
   
  
 0.851
mfd
Transcription-repair coupling factor.
 
   
 0.723
EIO_0382
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase.
       0.678
EIO_0380
Cell division protein FtsZ.
 
   
 0.669
radA
DNA repair protein RadA.
  
   
 0.664
ruvA
Holliday junction DNA helicase motor protein.
 
  
 0.637
EIO_0765
Exodeoxyribonuclease VII, large subunit.
 
   
 0.603
recF
Recombination protein F.
  
   
 0.590
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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