Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
pycPyruvate carboxylase. (1146 aa)    
Predicted Functional Partners:
EIO_0203
Pyruvate kinase.
   
 0.955
EIO_2099
Citrate (Si)-synthase.
  
 
 0.952
pdhB
Pyruvate dehydrogenase subunit beta.
  
 
 0.951
EIO_0118
Malate dehydrogenase.
  
 0.943
EIO_0221
Phosphoenolpyruvate carboxykinase.
    
 0.942
EIO_0993
Pyruvate phosphate dikinase.
    
 0.932
EIO_0731
Lactate dehydrogenase.
  
 
 0.914
EIO_1884
Putative allophanate hydrolase subunit 2.
    
 0.913
EIO_0385
Acetyl-coenzyme A synthetase.
  
 
 0.910
EIO_0386
acetate--CoA ligase.
  
 
 0.910
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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