Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_0397Stage V sporulation protein D. (594 aa)    
Predicted Functional Partners:
EIO_0373
Cell division protein FtsW.
 0.997
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase.
  
 0.993
EIO_0378
Cell division protein FtsQ.
 
 0.990
mreD
Rod shape-determining protein MreD.
 0.989
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase.
  
 0.978
EIO_2054
Monofunctional biosynthetic peptidoglycan transglycosylase.
 
 
 0.962
EIO_0399
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase.
 
  
 0.960
EIO_1170
Septum formation initiator.
  
 0.959
EIO_0395
S-adenosyl-methyltransferase MraW.
  
 0.958
EIO_0394
MraZ, putative.
 
  
 0.957
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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