STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0407Conserved hypothetical protein. (166 aa)    
Predicted Functional Partners:
EIO_0408
Peptidase, M23/M37 family protein.
 
   
 0.933
EIO_0409
AhpC/TSA family protein.
     
 0.651
EIO_2817
Lipoprotein, putative.
  
     0.517
mreC
Rod shape-determining protein MreC.
 
     0.491
EIO_2217
Conserved hypothetical protein.
  
     0.485
EIO_1772
Conserved hypothetical protein.
  
     0.442
EIO_2816
Conserved hypothetical protein.
  
     0.425
EIO_0213
RpsU-divergently transcribed.
  
     0.416
EIO_1170
Septum formation initiator.
 
     0.414
mreD
Rod shape-determining protein MreD.
 
     0.410
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.