Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0412S-adenosylmethionine:tRNA ribosyltransferase-isomerase. (255 aa)    
Predicted Functional Partners:
queA
S-adenosylmethionine/tRNA-ribosyltransferase- isomerase.
     0.994
EIO_1407
Probable queuine tRNA ribosyltransferase.
  
 0.990
EIO_0413
MFS-type transporter.
       0.820
EIO_2056
4Fe-4S ferredoxin, iron-sulfur cluster binding protein.
 
   
 0.772
gid
Gid protein.
 
  
 0.769
EIO_2858
Membrane protein, putative.
 
  
 0.708
EIO_0414
Dihydrolipoamide dehydrogenase.
       0.666
EIO_2143
Holliday junction DNA helicase RuvB.
 
  
 0.567
dnaX
DNA polymerase III, subunits gamma and tau.
     
 0.464
EIO_0409
AhpC/TSA family protein.
     
 0.457
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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