Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0413MFS-type transporter. (425 aa)    
Predicted Functional Partners:
EIO_0412
S-adenosylmethionine:tRNA ribosyltransferase-isomerase.
       0.820
queA
S-adenosylmethionine/tRNA-ribosyltransferase- isomerase.
       0.773
EIO_0414
Dihydrolipoamide dehydrogenase.
     
 0.606
EIO_2225
Heat shock protein DnaJ-like protein.
  
     0.461
EIO_2679
Conserved hypothetical protein.
  
     0.409
EIO_2430
Glutamine-pyruvate aminotransferase.
      
 0.400
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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