STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0439Periplasmic binding protein. (308 aa)    
Predicted Functional Partners:
EIO_0431
ABC transporter ATP-binding protein.
 
 0.948
EIO_1264
ABC transporter related protein.
 
 0.910
EIO_0435
Fe(3+)-citrate import system permease protein yfmD.
 
 0.875
EIO_0438
ABC transporter substrate-binding protein.
 
    
0.809
EIO_0437
Periplasmic binding protein.
 
    
0.808
EIO_0434
ABC transporter permease protein.
 
 0.789
EIO_0432
ABC-type enterobactin transport system, permease component.
 
 
 0.784
EIO_0433
Transport system permease protein.
 
 
 0.749
EIO_0436
ABC transporter substrate-binding protein.
 
    
0.741
EIO_1260
Transport system permease protein.
 
 0.716
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.