STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0446Conserved hypothetical protein. (192 aa)    
Predicted Functional Partners:
EIO_0447
Conserved hypothetical protein.
 
  
 0.985
EIO_0448
Error-prone DNA polymerase.
 
  
 0.929
dinB
DNA polymerase IV.
  
  
 0.825
EIO_0444
Efflux transporter.
       0.576
EIO_0445
Putative glycosyl hydrolase.
       0.576
EIO_0529
Conserved hypothetical protein.
  
     0.524
dnaE
DNA polymerase III subunit alpha.
  
  
 0.488
EIO_2769
Exonuclease-like protein.
  
     0.434
EIO_0443
Transcriptional regulator.
       0.401
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.