Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ychFGTP-binding protein YchF. (365 aa)    
Predicted Functional Partners:
EIO_0729
peptidyl-tRNA hydrolase.
 
  
 0.946
EIO_2586
50S ribosomal protein L14.
   
 
 0.844
rplI
Ribosomal protein L9.
  
 
 0.843
EIO_0082
50S ribosomal protein L19.
 
 
 0.842
prfA
Peptide chain release factor 1.
 
 
 0.842
pheT
phenylalanyl-tRNA synthetase, beta subunit.
  
  
 0.824
rplX
Ribosomal protein L24.
   
 
 0.818
EIO_0418
50S ribosomal protein L21.
 
 
 0.794
rplK
Ribosomal protein L11.
   
 
 0.793
rplM
Ribosomal protein L13.
  
 
 0.779
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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