Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0474NlpC/P60 domain protein. (273 aa)    
Predicted Functional Partners:
EIO_0473
Cytosol aminopeptidase family protein.
       0.854
ftsX
Cell division protein FtsX.
   
 
 0.722
EIO_2621
Carboxyl-terminal protease family protein.
    
 
 0.718
EIO_1552
Conserved hypothetical protein.
  
   
 0.631
EIO_0475
Conserved hypothetical protein.
  
     0.595
EIO_0472
Hypothetical protein.
       0.578
EIO_0592
Conserved hypothetical protein.
 
  
 0.557
EIO_0471
Carbonic anhydrase.
       0.530
EIO_2824
Conserved hypothetical protein.
 
     0.438
hspQ
Heat shock protein hspQ.
  
   
 0.433
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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