STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0480ATPase, AFG1 family. (350 aa)    
Predicted Functional Partners:
sdhA
Succinate dehydrogenase.
 
    0.792
EIO_0478
Auxin Efflux Carrier.
       0.784
sdhB
Succinate dehydrogenase.
 
    0.783
EIO_0479
Conserved hypothetical protein.
       0.774
EIO_2320
Deoxyribose-phosphate aldolase.
 
      0.715
EIO_0477
Conserved hypothetical protein.
       0.645
EIO_0120
Succinate dehydrogenase cytochrome b-556 subunit.
 
   
 0.525
EIO_2854
Nicotinamidase.
 
      0.482
EIO_0476
Conserved hypothetical protein.
       0.459
radA
DNA repair protein RadA.
   
    0.456
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.