Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_0482folC bifunctional protein. (434 aa)    
Predicted Functional Partners:
EIO_0483
acetyl-CoA carboxylase, carboxyl transferase, beta subunit.
 
  
 0.922
guaA
GMP synthase.
 
  
 0.671
glyA
Serine hydroxymethyltransferase.
  
 0.667
EIO_0762
Adenylosuccinate synthetase.
 
   
 0.633
EIO_0484
Phospholipase D/transphosphatidylase.
       0.589
EIO_1299
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
  
  
 0.584
EIO_0647
Riboflavin biosynthesis protein RibD.
     
 0.568
valS
valyl-tRNA synthetase.
  
  
 0.512
purF
Amidophosphoribosyltransferase.
  
  
 0.505
EIO_1765
Transcriptional repressor.
  
   
 0.505
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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