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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0488Methionine aminopeptidase, type I. (272 aa)    
Predicted Functional Partners:
rpmD
Ribosomal protein L30.
  
 0.987
rplW
Ribosomal protein L23.
 
 0.985
rplJ
50S ribosomal protein L10.
  
 0.985
rplV
Ribosomal protein L22.
 
 0.978
rplR
50S ribosomal protein L18.
 
 
 0.973
rpsE
30S ribosomal protein S5.
 
   0.972
rplF
50S ribosomal protein L6.
 
 
 0.971
rpsH
Ribosomal protein S8.
 
 
 0.969
rplP
50S ribosomal protein L16.
 
 
 0.969
EIO_2594
50S ribosomal protein L3.
 
 
 0.965
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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