Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0495Transcriptional coactivator/pterin dehydratase. (91 aa)    
Predicted Functional Partners:
EIO_0497
Endoribonuclease L-PSP family protein.
  
    0.880
EIO_0496
Conserved hypothetical protein.
  
    0.861
hlyD
Type I secretion membrane fusion protein, HlyD.
       0.658
rpoZ
DNA-directed RNA polymerase omega subunit.
   
 
  0.620
EIO_2733
polyA polymerase family protein.
 
      0.614
EIO_0026
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.585
amt-2
Aromatic amino acid aminotransferase.
  
  
 0.548
EIO_0499
Conserved hypothetical protein.
       0.457
EIO_2665
Glycerophosphoryl diester phosphodiesterase.
   
   0.413
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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