Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_0505Cytochrome c subfamily. (146 aa)    
Predicted Functional Partners:
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit.
 
 0.973
EIO_0898
Cytochrome c, class I.
  
  
  0.966
EIO_2830
Ubiquinol--cytochrome c reductase, cytochrome c1.
 
 0.956
EIO_2828
Ubiquinol--cytochrome c reductase, cytochrome B.
  
 0.937
fbcB
Cytochrome b.
 
 0.859
EIO_0772
Cytochrome c oxidase, subunit III.
  
 0.843
EIO_0686
Cytochrome-c oxidase.
  
 0.787
EIO_2445
Cytochrome c oxidase, aa3-type, subunit I.
  
 0.787
EIO_0348
Putative transmembrane cytochrome D ubiquinol oxidase subunit I.
    
 0.749
EIO_0347
Cytochrome d oxidase subunit II.
     
 0.740
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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