Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIO_0507Dipeptidase AC, Metallo peptidase, MEROPS family M19. (351 aa)    
Predicted Functional Partners:
EIO_1736
Gamma-glutamyl-gamma-aminobutyrate hydrolase.
      0.909
EIO_0508
Isopentenyl-diphosphate delta-isomerase.
       0.746
EIO_0509
Dihydrodipicolinate synthase.
       0.662
EIO_1056
Extracellular solute-binding protein.
 
     0.512
EIO_1052
ABC transporter related protein.
 
     0.451
argD
Acetylornithine/succinyldiaminopimelate aminotransferase.
   
  
 0.441
EIO_2305
Gamma-glutamyltransferase.
 
  
 0.441
EIO_0510
Putative soluble lytic transglycosylase.
       0.440
EIO_1054
Binding-protein-dependent transport systems inner membrane component.
 
     0.416
EIO_2430
Glutamine-pyruvate aminotransferase.
      
 0.400
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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