STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0510Putative soluble lytic transglycosylase. (666 aa)    
Predicted Functional Partners:
EIO_0509
Dihydrodipicolinate synthase.
       0.695
EIO_0378
Cell division protein FtsQ.
  
     0.610
EIO_1085
Transglycosylase SLT domain protein.
 
   
 0.601
EIO_0511
Putative HTH-type transcriptional regulator rrf2-like protein.
       0.553
EIO_2769
Exonuclease-like protein.
 
     0.541
EIO_0367
Possible flagellar switch protein FliM.
 
    0.509
mrcB
Glycosyl transferase family protein.
 
   
 0.483
EIO_2428
Flagellar hook protein FlgE.
 
  
 0.479
fliE
Flagellar hook-basal body protein FliE.
  
  
 0.462
EIO_2401
H+-transporting two-sector ATPase, flagellum-specific.
  
  
 0.457
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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