Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_0564N-6 Adenine-specific DNA methylase. (255 aa)    
Predicted Functional Partners:
EIO_0565
Decaprenyl diphosphate synthase.
       0.718
EIO_0563
Conserved hypothetical protein.
       0.704
EIO_0238
Transcriptional regulator, fis family.
  
  
 0.619
EIO_1676
DNA polymerase III subunit chi.
  
     0.473
EIO_2718
Ribosome maturation factor rimP.
 
    0.424
EIO_0647
Riboflavin biosynthesis protein RibD.
       0.416
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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