STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0600Conserved hypothetical protein. (101 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO.
 
     0.865
EIO_0603
Signal peptidase I.
 
     0.830
EIO_0602
Ribonuclease III.
 
     0.825
era
GTP-binding protein Era.
       0.802
EIO_0606
Conserved hypothetical protein.
 
     0.704
acpS
4'-phosphopantetheinyl transferase.
       0.698
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ.
       0.698
rpoZ
DNA-directed RNA polymerase omega subunit.
 
     0.667
EIO_2686
Conserved hypothetical protein.
  
     0.646
EIO_0607
RelA/SpoT family protein.
       0.629
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.