Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0602Ribonuclease III. (228 aa)    
Predicted Functional Partners:
era
GTP-binding protein Era.
 
  
 0.986
EIO_0603
Signal peptidase I.
 
 0.977
rpoC
DNA-directed RNA polymerase, beta' subunit.
 
 
 0.943
EIO_0082
50S ribosomal protein L19.
 
 0.910
EIO_2182
Ornithine carbamoyltransferase.
   
 0.898
rpsI
30S ribosomal protein S9.
   
 
 0.890
rpsO
Ribosomal protein S15.
 
 
 0.889
rpmF
Ribosomal protein L32.
  
  0.886
rpsP
Ribosomal protein S16.
 
 
 0.882
EIO_2548
Ribonuclease P protein component.
  
 
 0.881
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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