Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0622Chromosome segregation protein SMC. (419 aa)    
Predicted Functional Partners:
EIO_0623
Chromosome segregation protein SMC.
     0.994
EIO_2259
Segregation and condensation protein A.
 
 
 0.906
EIO_2258
Putative transcriptional regulator.
 
 
 0.811
dnaX
DNA polymerase III, subunits gamma and tau.
 
    0.665
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
   
 0.579
EIO_0624
IAA acetyltransferase.
       0.549
parE
DNA topoisomerase IV, B subunit.
  
 
 0.509
EIO_1781
DNA topoisomerase I.
  
 
 0.496
gyrB
DNA gyrase, B subunit.
   
 
 0.446
parB
Chromosome partitioning protein parB.
 
 
 0.432
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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