STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0622Chromosome segregation protein SMC. (419 aa)    
Predicted Functional Partners:
EIO_0623
Chromosome segregation protein SMC.
     0.994
EIO_2259
Segregation and condensation protein A.
 
 
 0.954
EIO_2258
Putative transcriptional regulator.
 
 
 0.823
dnaX
DNA polymerase III, subunits gamma and tau.
 
    0.663
EIO_0624
IAA acetyltransferase.
       0.549
EIO_1781
DNA topoisomerase I.
  
 
 0.532
EIO_0078
DEAD/DEAH box helicase domain protein.
   
 0.458
rhlE
Putative ATP-dependent RNA helicase RhlE.
   
 0.458
parE
DNA topoisomerase IV, B subunit.
  
 
 0.442
EIO_1173
Peptidyl-prolyl cis-trans isomerase, cyclophilin type.
  
  0.436
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.