Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0627Iojap family protein. (169 aa)    
Predicted Functional Partners:
EIO_0626
Ribosomal RNA large subunit methyltransferase H.
  
  
 0.980
EIO_0206
50S ribosomal protein L20.
 
 0.942
nadD
Nicotinic acid mononucleotide adenylyltransferase.
 
  
 0.935
EIO_0082
50S ribosomal protein L19.
   
  0.931
EIO_0418
50S ribosomal protein L21.
  
  0.924
rplO
Ribosomal protein L15.
  
 
  0.921
rpmF
Ribosomal protein L32.
  
 0.915
rplQ
Ribosomal protein L17.
  
 0.914
rplP
50S ribosomal protein L16.
   
  0.909
EIO_0421
GTP-binding protein, GTP1/OBG family.
 
 
 0.905
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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