Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_06385-oxoprolinase (ATP-hydrolyzing). (581 aa)    
Predicted Functional Partners:
EIO_0639
5-oxoprolinase (ATP-hydrolyzing).
 0.999
EIO_1800
Hydantoin utilization protein.
 0.999
EIO_1801
Putative N-methylhydantoinase B.
  
  
 
0.924
EIO_1802
Hydantoin utilization protein B.
  
  
 
0.923
EIO_1670
Aminohydrolase protein.
     
  0.900
EIO_2064
Cytosine deaminase.
     
  0.900
EIO_0635
TRAP-type transport system, small permease component.
       0.777
EIO_0634
Putative transport protein.
       0.773
EIO_0636
Sialic acid TRAP transporter permease protein siaT.
       0.773
EIO_0637
Hypothetical protein.
       0.773
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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