STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0652DNA-binding protein transcriptional activator, 3HPP-binding protein. (356 aa)    
Predicted Functional Partners:
EIO_1552
Conserved hypothetical protein.
  
 0.943
EIO_0953
Thioredoxin reductase.
  
 
  0.903
EIO_1459
Aminotransferase, class-V.
     
  0.900
EIO_0630
Endonuclease/exonuclease/phosphatase.
    
   0.772
sufC
FeS assembly ATPase SufC.
  
  
 0.725
sufB
FeS assembly protein SufB.
  
 
 0.654
sufBD
SufBD protein.
  
 
 0.649
EIO_1284
Fe-S metabolism associated family protein.
  
 0.588
EIO_0651
Putative acyl carrier protein phosphodiesterase.
       0.553
EIO_0653
Sorbose dehydrogenase.
   
   0.515
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.