Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0659DNA-binding transcriptional regulator CytR. (353 aa)    
Predicted Functional Partners:
EIO_2430
Glutamine-pyruvate aminotransferase.
    
 
 0.864
EIO_0657
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
   
 
 0.703
EIO_0658
Putative HTH-type transcriptional regulator ywnA.
     
 0.671
EIO_0656
Hypothetical protein.
       0.632
EIO_0216
Phosphocarrier protein HPr.
   
 
 0.622
EIO_0655
Putative membrane protein.
       0.545
EIO_0660
ABC transporter permease.
       0.539
xylBch
Xylulokinase protein.
 
 
 
 0.502
EIO_0661
ABC transporter related protein.
    
  0.490
EIO_0664
Beta-glucosidase.
       0.444
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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