Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0660ABC transporter permease. (270 aa)    
Predicted Functional Partners:
EIO_1602
Putative solute-binding component of ABC transporter.
 0.992
EIO_1693
ABC spermidine/putrescine transporter, inner membrane subunit.
 0.992
EIO_1333
Binding-protein-dependent transport systems inner membrane component.
 0.991
EIO_0663
ABC transporter permease.
0.990
EIO_0661
ABC transporter related protein.
 
 0.963
EIO_0662
Extracellular solute-binding protein.
 
 0.960
EIO_1603
Extracellular solute-binding protein family 1.
 
 0.891
EIO_1691
ABC spermidine/putrescine transporter, ATPase subunit.
 
 0.882
EIO_1334
Extracellular solute-binding protein family 1.
 
 0.879
EIO_1600
ABC transporter related protein.
 
 0.879
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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