Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0671Periplasmic solute binding protein. (309 aa)    
Predicted Functional Partners:
EIO_0961
ABC transporter, permease protein.
 
 0.975
EIO_2654
ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD.
 
 0.970
EIO_2655
ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC.
 
 0.924
EIO_0960
ABC transporter, ATP-binding protein.
 
  
 0.922
EIO_0670
Conserved hypothetical protein.
 
  
 0.774
sitB
ABC Mn+2/Fe+2 transporter, ATPase subunit SitB.
 
  
 0.750
EIO_1019
ABC transporter, ATPase subunit.
    
 0.744
EIO_0675
Oligopeptide ABC transporter, ATP-binding protein.
    
  0.506
rpsN
Ribosomal protein S14.
  
  
 0.469
EIO_0046
Cobalamin synthesis protein, P47K.
  
  
 0.449
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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