Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_0672Amidase protein. (509 aa)    
Predicted Functional Partners:
gatB
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
 0.986
gatC
glutamyl-tRNA(Gln) amidotransferase subunit C.
 
 0.972
EIO_1917
Aldehyde dehydrogenase.
    
  0.901
ald
Aldehyde dehydrogenase family protein, putative.
    
  0.901
EIO_2382
Aldehyde dehydrogenase.
    
  0.901
EIO_1884
Putative allophanate hydrolase subunit 2.
    
 0.886
EIO_0673
Putative oxidoreductase protein.
 
 
  0.822
yjgF
YjgF family protein.
  
    0.773
EIO_0677
Binding-protein-dependent transport systems inner membrane component.
 
     0.766
EIO_0675
Oligopeptide ABC transporter, ATP-binding protein.
 
    0.739
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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