Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
matRTranscriptional regulator (activator) protein. (227 aa)    
Predicted Functional Partners:
EIO_1822
GntR family transcriptional regulator.
  
     0.774
EIO_0097
Pyruvate dehydrogenase complex repressor.
  
  
 0.720
EIO_1865
Regulatory protein, GntR:Bacterial regulatory protein, GntR.
  
  
 0.670
EIO_0029
Transcriptional regulator, GntR family.
  
     0.603
EIO_0028
Putative regulatory protein, GntR familiy.
  
     0.533
EIO_0680
Pyrrolo-quinoline quinone.
       0.519
EIO_0681
Quinoprotein glucose dehydrogenase.
       0.519
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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