Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0698DNA-cytosine methyltransferase. (555 aa)    
Predicted Functional Partners:
EIO_0709
Modification methylase XorII.
  
  
 
0.928
metK
S-adenosylmethionine synthetase.
    
 0.919
EIO_2568
N-acyl-L-homoserine lactone synthetase-like protein.
     
 0.905
EIO_1060
5-methylthioadenosine/S-adenosylhomocysteine deaminase.
   
 
  0.902
EIO_2775
Adenosylhomocysteinase.
     
 0.901
EIO_0694
Endonuclease.
  
 0.839
EIO_0693
Conserved hypothetical protein.
 
  
 0.803
EIO_0695
Conserved hypothetical protein.
 
     0.784
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
 
   
 0.740
EIO_0699
DNA mismatch endonuclease vsr.
     
 0.524
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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