STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0718ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit. (100 aa)    
Predicted Functional Partners:
EIO_0716
ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit.
 
 0.982
EIO_0719
Periplasmic binding protein.
 
 0.974
EIO_0720
TonB-dependent receptor.
 
    0.949
EIO_0717
ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit.
 
     0.935
hmuV
Hemin import ATP-binding protein hmuV.
  
 
 0.866
EIO_0431
ABC transporter ATP-binding protein.
  
 0.715
EIO_1264
ABC transporter related protein.
  
 0.715
EIO_0436
ABC transporter substrate-binding protein.
  
 0.515
EIO_0437
Periplasmic binding protein.
  
 0.506
EIO_0438
ABC transporter substrate-binding protein.
  
 0.506
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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