Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
carBCarbamoyl-phosphate synthase large subunit. (1110 aa)    
Predicted Functional Partners:
pyrB
Aspartate carbamoyltransferase.
 
 0.999
carA
Carbamoyl-phosphate synthase, small subunit.
 0.999
argF
Ornithine carbamoyltransferase.
 
 
 0.996
argG
Argininosuccinate synthase.
 
 
 0.994
EIO_0582
Amidohydrolase family, putative.
 
 0.987
purF
Amidophosphoribosyltransferase.
 
 
 0.987
EIO_2430
Glutamine-pyruvate aminotransferase.
  
 
 0.972
EIO_2158
Dihydroorotate dehydrogenase 2.
 
 
 0.969
pyrE
Orotate phosphoribosyltransferase.
 
 
 0.956
glmS
Glucosamine--fructose-6-phosphate aminotransferase.
   
 0.946
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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