STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0729peptidyl-tRNA hydrolase. (241 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein YchF.
 
  
 0.946
EIO_0730
50S ribosomal protein L25/general stress protein Ctc.
 
  
 0.860
mfd
Transcription-repair coupling factor.
  
  
 0.713
prfA
Peptide chain release factor 1.
 
   
 0.701
EIO_2134
Probable cell cycle protein.
 
  
 0.646
guaA
GMP synthase.
  
  
 0.645
rpmA
50S ribosomal protein L27.
 
  
 0.593
EIO_0792
Primosomal protein N', putative.
  
    0.579
pheT
phenylalanyl-tRNA synthetase, beta subunit.
     
 0.557
prfB
Peptide chain release factor 2.
 
  
 0.552
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.