Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIO_0729peptidyl-tRNA hydrolase. (241 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein YchF.
 
  
 0.946
EIO_0730
50S ribosomal protein L25/general stress protein Ctc.
 
  
 0.889
EIO_2134
Probable cell cycle protein.
 
  
 0.731
prfA
Peptide chain release factor 1.
 
  
 0.724
mfd
Transcription-repair coupling factor.
  
  
 0.710
guaA
GMP synthase.
     
 0.665
rpmA
50S ribosomal protein L27.
 
  
 0.629
EIO_2550
tRNA 2-thiocytidine biosynthesis protein.
  
  
 0.617
EIO_0792
Primosomal protein N', putative.
  
    0.587
pheT
phenylalanyl-tRNA synthetase, beta subunit.
     
 0.572
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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