Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0731Lactate dehydrogenase. (387 aa)    
Predicted Functional Partners:
EIO_0742
D-lactate dehydrogenase.
 
 0.951
EIO_0203
Pyruvate kinase.
   
 
 0.931
pyc
Pyruvate carboxylase.
  
 
 0.914
EIO_2210
Elongation factor P.
  
 0.909
EIO_0993
Pyruvate phosphate dikinase.
     
 0.907
pdhB
Pyruvate dehydrogenase subunit beta.
    
 0.906
EIO_1169
Pyruvate dehydrogenase (lipoamide).
   
 
  0.900
ilvB
Acetolactate synthase, large subunit, biosynthetic type.
  
 
 0.874
EIO_2228
2-isopropylmalate synthase.
    
 0.849
ilvH
Acetolactate synthase small subunit.
  
 
  0.813
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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