Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0735Beta-lactamase. (278 aa)    
Predicted Functional Partners:
EIO_0445
Putative glycosyl hydrolase.
  
 0.949
EIO_2481
N-acetylmuramic acid-6-phosphate etherase.
    0.909
EIO_2482
ATPase BadF/BadG/BcrA/BcrD type.
 
    0.631
EIO_0275
Putative beta-N-acetylhexosaminidase protein.
 
  
 0.561
EIO_2486
Extracellular solute-binding protein.
  
  
  0.545
EIO_0737
Peptide ABC transporter.
  
    0.481
EIO_2260
Beta-hexosamidase.
 
  
 0.431
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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