Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_0737Peptide ABC transporter. (375 aa)    
Predicted Functional Partners:
EIO_0902
Nickel import ATP-binding protein NikD, putative.
 
  
 
0.932
EIO_0739
Binding-protein-dependent transport systems inner membrane component.
  
  0.706
EIO_0278
Putative peptide ABC transporter, permease protein.
  
  0.665
EIO_1486
Binding-protein-dependent transport systems inner membrane component.
  
  0.652
EIO_2674
Oligopeptide ABC transporter (permease).
  
  0.644
EIO_0783
Peptide ABC transporter permease.
  
  0.613
EIO_1495
Dipeptide ABC transporter.
   
  0.613
EIO_0294
Probable dipeptide transport system permease protein.
   
  0.591
EIO_2471
Oligopeptide ABC transporter, permease protein.
  
  0.552
EIO_0676
Dipeptide ABC transporter.
  
  0.545
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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