Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIO_0744(Dimethylallyl)adenosine tRNA methylthiotransferase miaB. (440 aa)    
Predicted Functional Partners:
EIO_0745
PhoH family protein.
 
    0.818
EIO_1088
tRNA delta(2)-isopentenylpyrophosphate transferase.
 
  
 0.764
EIO_0746
Putative metalloprotease.
  
    0.719
EIO_0743
Conserved hypothetical protein.
       0.695
EIO_2632
Ribosomal RNA large subunit methyltransferase N.
 
  
 0.688
EIO_0392
Putative Mrp (Multidrug resistance-associated proteins) family protein.
  
   
 0.660
EIO_0747
CBS domain protein.
       0.517
EIO_1558
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
  
  
 0.508
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase.
 
  
 0.492
cutE
Apolipoprotein N-acyltransferase.
       0.470
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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