Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0759Protein involved in catabolism of external DNA. (258 aa)    
Predicted Functional Partners:
pyrG
CTP synthetase.
       0.778
EIO_0757
Polar amino acid transport system substrate-binding protein; His/Glu/Gln/Arg/opine family ABC transporter, periplasmic His/Glu/Gln/Arg/opine family-binding protein.
       0.509
EIO_0758
ABC basic amino acid transporter, ATPase subunit.
       0.509
EIO_0761
Putative preprotein translocase.
       0.451
EIO_0755
His/Glu/Gln/Arg/opine family ABC transporter, permease protein.
  
    0.418
EIO_0756
Binding-protein-dependent transport systems inner membrane component.
       0.418
EIO_0754
Glutamine synthetase family protein.
       0.415
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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